2024

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Larue A, Atlasi Y*. The epigenetic landscape in intestinal stem cells and its deregulation in colorectal cancer. Stem Cells (2024).

DOI:10.1093/stmcls/sxae027

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2023

 

Mirzadeh Azad F, Struys EA, Wingert V, Hannibal L, Mills K, Jansen JH, Longley DB, Stunnenberg HG, Atlasi Y*. Spic regulates one carbon metabolism and histone methylation in ground state pluripotency. Science Advances (2023).

DOI:10.1126/sciadv.adg7997

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Chalkiadaki K, Hooshmandi M, Lach G, Statoulla E, Simbriger K, Amorim IS, Kouloulia S, Zafeiri M, Pothos P, Bonneil É, Gantois I, Popic J, Kim SH, Wong C, Cao R, Komiyama NH, Atlasi Y, Jafarnejad SM, Khoutorsky A, Gkogkas CG. Mnk1/2 kinases regulate memory and autism-related behaviours via Syngap1. Brain (2023).

DOI:10.1093/brain/awac398

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2022

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Sijm A, Atlasi Y*, van der Knaap JA, Wolf van der Meer J, Chalkley GE, Bezstarosti K, Dekkers DHW, Doff WAS, Ozgur Z, van IJcken WFJ, Demmers JAA, Verrijzer CP.; USP7 regulates the ncPRC1 Polycomb axis to stimulate genomic H2AK119ub1 deposition uncoupled from H3K27me3 USP7 stabilizes ncPRC1.6; Science Advances (2022).
DOI: 10.1126/sciadv.abq7598

​Saeinasab M, Atlasi Y*, Matin M*. Functional Role of lncRNAs in Gastrointestinal Malignancies: The Peculiar Case of Small Nucleolar Host Gene (SNHG) Family; FEBS J (2022).

DOI:10.1111/febs.16668

2021

 

Mirzadeh Azad F, Atlasi Y*. Enhancer deregulation in cancer; Cancers (2021).

DOI:10.3390/cancers13143532

Mirzadeh Azad F, Atlasi Y*. WNT-regulated enhancers in stem cell plasticity; Trends in Cell Biology (2021).

DOI:10.3390/cancers13143532

 

2020

 

Peng T, Zhai Y, Atlasi Y, Ter Huurne M, Marks H, Stunnenberg HG, Megchelenbrink W. STARR-seq identifies active, chromatin masked and dormant enhancers in pluripotent mouse embryonic stem cells; Genome Research (2020).

DOI:10.1186/s13059-020-02156-3

Atlasi Y*, Atlasi Y, Jafarnejad SM, Gkogkas CG, Vermeulen M, Sonenberg N, Stunnenberg HG. The translational landscape of ground state pluripotency; Nature Communications (2020).

DOI:10.1038/s41467-020-15449-9

 

Bell E, Curry EW, Megchelenbrink W, Jouneau L, Brochard V, Tomaz RA, Mau KHT, Atlasi Y, de Souza RA, Marks H, Stunnenberg HG, Jouneau A, Azuara V. Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency. Nature Communications (2020).

DOI:10.1038/s41467-020-14916-7

 

2019

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Atlasi Y, Megchelenbrink W, Peng T, Habibi E, Joshi O, Wang SY, Wang C, Logie C, Poser I, Marks H, Stunnenberg HG. Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency. Nature Cell Biology (2019).

DOI:10.1038/s41556-019-0310-9